NESG GERSTEIN LAB LINKHUB

Supplementary Material for OUP Bioinformatics submission Leveraging the Structure of the Semantic Web to Enhance Information Retrieval for Proteomics by Smith et al 2007

• Paper Supplement (Formal equations and detailed description of method, example word weight vector, full result tables and discussion for empirical assessment against Pubmed, and results of paired t-tests)
• Top 100 results of Yahoo for UniProt P26364 and our reranking of it
• Results of our full procedure for UniProt P26364
• Top 100 results of Yahoo for P26365 and our reranking of it
• Results of our full procedure for UniProt P26365
• Results of our procedure against PubMed for UniProt P26364
• BMC Bioinformatics LinkHub paper.
• Code Release
• Top words in word weight vectors and other statistics for randomly chosen SwissProt and TrEMBL proteins used in empirical evaluation.