

Example RDF queries. (a) shows a part of the SeRQL query that finds pairs of worm (C. elegans) proteins homologous to pairs of interacting
proteins in yeast (C. cervisiae), i.e. “interologs”. b) shows part of the
corresponding query results. (c) shows the SeRQL query that
explores the relationship between gene essentiality and the level of pseudogene content in yeast, which is one feature that
might be hypothesized to be associated with essentiality, with queries of the
joined YeastHub and LinkHub
data. (d) shows the yeast pseudogenes
found, interestingly only one. (e) shows part of the
list of pseudogenes found in human homologs for a similar query; the full list is long, around
20000, consistent with there being many known pseudogenes
in humans.